Manually segment brain regions or tracks
To manually segment brain regions or tracks in standard space that can then be visualised along with other samples (e.g. in BrainRender) see Manually segment in standard space.
To generate a heatmap of detected cell positions, see Heatmap generation
Export cell positions to brainrender
To convert cell positions to a format that can be used in brainrender, see Exporting detected cell positions to brainrender.