Installing neuro

If you have cellfinder or amap, then neuro is already installed for you


neuro is included with cellfinder and amap. Unless you have a particular reason not to, I would install cellfinder as this will install all the packages you may need. See cellfinder installation.

If you know what you're doing just run:

pip install neuro

If you're not completely sure what you're doing, read on.

Setting up your machine

Installing Python

neuro is written in Python, and so needs a functional Python installation. Your machine may already have Python installed, but I recommend installing miniconda.

See Using conda for details.

neuro should run on any type of Python installation, but if you don't use conda, I may not be able to help you.

Installing neuro

Remember to activate your conda environment before doing anything

pip install neuro