Citation

If you find cellfinder useful, and use it in your research, please cite the code repository:

Adam L. Tyson, Charly V. Rousseau, Christian J. Niedworok and Troy W. Margrie (2020). cellfinder: automated 3D cell detection and registration of whole-brain images. doi:10.5281/zenodo.3665329

If you use the image registration parts of cellfinder (amap), please cite the original Nature Communications paper along with the repository:

Adam L. Tyson, Charly V. Rousseau, Christian J. Niedworok and Troy W. Margrie (2019). amap: automatic atlas propagation. doi:10.5281/zenodo.3582162

Please also "star" the GitHub repositories (cellfinder & amap) as this helps more people find the software.

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